Scientific Publications

Find here the most relevant articles concerning MaxQuant and Perseus.


MaxQuant


MaxDIA enables library-based and library-free data-independent acquisition proteomics
Pavel Sinitcyn, Hamid Hamzeiy, Favio Salinas Soto, Daniel Itzhak, Frank McCarthy, Christoph Wichmann, Martin Steger, Uli Ohmayer, Ute Distler, Stephanie Kaspar-Schoenefeld, Nikita Prianichnikov, Şule Yılmaz, Jan Daniel Rudolph, Stefan Tenzer, Yasset Perez-Riverol, Nagarjuna Nagaraj, Sean J Humphrey, Jürgen Cox
Nature Biotechnology (2021)


Andromeda: a peptide search engine integrated into the MaxQuant environment
Jurgen Cox, Nadin Neuhauser, Annette Michalski, Richard A Scheltema, Jesper V Olsen, Matthias Mann
Journal of proteome research (2011)


MaxQuant enables high peptide identification rates, individualized ppb-range mass accuracies and proteome-wide protein quantification
Jürgen Cox, Matthias Mann
Nature Biotechnology (2008)



Perseus


The Perseus computational platform for comprehensive analysis of (prote) omics data
Stefka Tyanova, Tikira Temu, Pavel Sinitcyn, Arthur Carlson, Marco Y Hein, Tamar Geiger, Matthias Mann, Jürgen Cox
Nature methods (2016)